Scaffold Ga0222649_1000581

Overview

Basic Information

• Taxon OID: 3300022839
• Scaffold ID: Ga0222649_1000581
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #337
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11713
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (31.25%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023291	Metagenome / Metatranscriptome	210	Y
F051716	Metagenome	143	Y
F070579	Metagenome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222649_100058113	F070579	N/A	VKFYITGSTRGLGKYLAEHFNCECLDRPIDLNMDINSVADSIEEGSTVILNAHASQLEYVHKLKDKCKLVICGSVAAVNADPTMTEYSEQKYNLEKTVTKLALESKYPILYLRLTSSSYRNEHLIAKSIQFWIDTPDVTFIGYNINE
Ga0222649_100058116	F051716	N/A	EYHKGQNQVVNPSLMEEKWMREVNHITQMRNKFPDMIPNITQIDMYSKKLYMEVQGVDFWQQTLDNNCTYDNILPNWREQMLDIFRAHKSLGIYKYSLHPSSYFVVDGKLKSINYFFCYRDIDPMISLRSVMSHISEDRQADLFPKMSAMGLDVDMPTPHKQIQMLAFESFKTNFPDDVMEEAKAIYA
Ga0222649_10005816	F023291	N/A	MSMQLFLNPDWKRIGISLSGGADSALLAYLILKETDANIYFTTQIRMWKTRPWQRYVALGVVEWFRNRFDNRIEHIEGFIPPELEEPTSPLITDEYGAAKPGNRIILRAHNEWVAHTYNLDAWFAAVNKNPNIAIPGALAERNNGVLPLHMVHMGVDILHPFVLTMKDEIIKQYYENNITELLNITRSCEGEFSGLDYTTYTPGQFVPICRNCFWCKEREWAIDQNK