Scaffold Ga0222711_1004218

Overview

Basic Information

• Taxon OID: 3300022837
• Scaffold ID: Ga0222711_1004218
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2891
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020603	Metagenome	223	Y
F028622	Metagenome	191	Y
F098057	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_10042182	F098057	AGGAG	MTLDQIVKLQSIVDKRAIRSDTLEFLNEQRFSESKQCMIRYGDMHIDHFLRVCANVMPNDYSDKDKTKEMFESIKKKILQEFGHGNH
Ga0222711_10042187	F028622	N/A	MIDEDKTYENEVKPTSDDRGSLDLTLVIENLNKKIKNLSGLEKIHKETNGDLRIHILKLDKEIYQLKKDMAFQKETHQMDIIQKDNEIGRLIKKITEK
Ga0222711_10042188	F020603	AGGA	MKKILLFILLSLFLTNCAQKPLINPETSRDKFNGDNISGNYYKDLQVCEYIHKENTSLIIRKLGISDKTLFVKKCMLEYGYTILR