Scaffold Ga0222711_1004183

Overview

Basic Information

• Taxon OID: 3300022837
• Scaffold ID: Ga0222711_1004183
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2906
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003357	Metagenome / Metatranscriptome	492	N
F025595	Metagenome / Metatranscriptome	201	N
F076488	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_10041836	F003357	AGGAGG	MKRNSWIVKQMFADAKNNLGWVFKGVLVAGGFVAGIKILTFLNMPKEIVFPVMWIAFIVLMAYKWYSMKYDWSKEDKAYDRASKKYTNKLKELK
Ga0222711_10041837	F076488	AGGAG	MRTEYDEVKEILVKHDVDLDGDIDYMMETIVYGEPLFQELYEYFMGDMPYDVAKGRGDVMSDEWILDRVQALGLIKEEQNDPNGLPLNFTNRYHQEEA
Ga0222711_10041838	F025595	AGGAGG	MTIDINGLSTKLEVLTSIKENIQDGDTDTAIDMVNQMIELEPAPGQRRPVADALD