Scaffold Ga0222711_1002829

Overview

Basic Information

• Taxon OID: 3300022837
• Scaffold ID: Ga0222711_1002829
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3810
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009393	Metagenome / Metatranscriptome	318	Y
F087930	Metagenome	110	N
F091440	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_10028293	F087930	AGG	MIYNTGKVLIGLRYKPPVRQHIGRDMMLLQTALLARPKTLWQRIARWLEIDL
Ga0222711_10028295	F091440	GGAG	MSFWLPVVFICLSGGNCGFANGSLTATASQCETTNYAVRQKLATDLDVASFKLVCIEINKHDFI
Ga0222711_10028299	F009393	AGGAG	MSSNSQIAFNPQGKTIVVPAAATAPVGVQAQVLVRFDPQATGQYRIVNAGTTTVFLGAGVSAADATAKAVAPVSGTPSDAIVLLPGAVEILRFNKDTFFSGLSSAAATVYITPGQGL