Scaffold Ga0222711

Basic Information
Taxon OID	3300022837 Open in IMG/M
Scaffold ID	Ga0222711_1002187 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #1699
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022837 Open in IMG/M

Scaffold ID

Ga0222711_1002187 Open in IMG/M

Source Dataset Name

Saline water microbial communities from Ace Lake, Antarctica - #1699

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4596
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4596

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019327	Metagenome / Metatranscriptome	230	Y
F032309	Metagenome / Metatranscriptome	180	N
F033761	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_10021872	F019327	GGA	VTLKHYTLNPTELDNKHITQIHKIIKQVINNKSDEYWKNYEDYSVFEQTAITIGLIEGEVKTFSSIYNREFYGDNVYRLFNRFLVSDDIRETGGSKTYDGEHRFFEMVHQQIEYVKSLNPAFYFMSRQRKNTKWLRWYFDKFNKQYNEDLMVSDRQYMVCNGSEYDCSQTLIYPKDKIVPFKLYK
Ga0222711_10021873	F033761	GGAG	MKINNNHEFYALDTAYQEKHKEIFDFFESQGVDVEINQDFAGLKTLLLSKDKDDYPYDFDSAFETSLDNSTAFVLYLKIDDEVVATYAAKKLSIPTFIEAMKEKFSGTYEDISDIAGTSAYSSCQWVSKDHRGKKLGRVLDHLKKHICFEYLKCTNNYAIHKEALADYHTEHLGYSTTKKLALIPNGDVGGAGEVIDKIYNITYTTVWEWDSKQSDIKALYS
Ga0222711_10021874	F032309	N/A	MVKNMRTETQDFFKYTQSKPFMDITHFWDIPYEEMLSDIKLVDEHYWRRPFDADNNQIDRMELDDTESVNHYPGMTGDLIEAHGWKSLCFLNETGNSKDQINRFPAVFNTAGDYKATLKYFLDNRKWTNVAEFSPTLVKFFKEVISKYMHVGQIFVTRLDGGGVITEHNDIPEDTKHLLDGEQVHMFDMLNTFNLCLNHTKSCYSVFDNKVMPAYDGCLRWTNVGKKHWVVNMNRKPQYQIIWQGIYKKDFRRLVMENK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222711_1002187

Overview

Ecosystem & Geography

Associated Families

Sequences