Scaffold Ga0222711_1000729

Overview

Basic Information

• Taxon OID: 3300022837
• Scaffold ID: Ga0222711_1000729
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9027
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000379	Metagenome / Metatranscriptome	1211	Y
F002602	Metagenome / Metatranscriptome	544	Y
F004614	Metagenome	431	Y
F008154	Metagenome	338	Y
F056138	Metagenome	138	Y
F096209	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_100072917	F002602	AGG	MKNTDQIKALAVAIEEKDNNIRMLLAQQGNHEVQIAEYREIVRELSAKLELYENKYGTVFKPSRNS
Ga0222711_100072918	F004614	N/A	MYSHHEIDVDTDEEFWPVLGILLAIWGAWTGVVHFLDWLTVDAIAWYVEPWTILPFLFLLVMKEKFDSLNPLHWWPMVWGYKIKLPDDERITIYPINGEDLIKEHGGPLHIHIVDYEHIKFRRKKDAVMYALRNF
Ga0222711_100072919	F056138	N/A	MKTLFINGCSFGTHWTNPSPEFVAALDCDNVTNLSKVGTSFQRACRSTIEWIAQNGNPRMVLIPITFAHRWELALNQDEDDIDGSWVPLQNSNFLSDDYKVQESSIDDVKKLVDQYYKIIPTIKTHWDKMFTDIITFSAFLEKQKINYLMWDMCNGFDKEHLNINIEPYKGFHKIDLISQNPRIIDIWKFCGNRYMRDTMPEDLRQKTPEFAHHHDSTRYKELEKYIIEYINNIK
Ga0222711_10007294	F008154	GGAGG	MNKDKEAKDLNDCYQELFKTVIALQARYNNQMIAGTMMAQALRIYKSNLTEEGFQAMVQTIADSSDTIEPFDTPSIN
Ga0222711_10007296	F096209	GGAG	MTVAIQTKSINDIYEEMTESYSLGEYLDGYTSYGEDALMTPDKFADRFQHICFGFGYREAEIIPQKLEIKEWCQEHLDKLESRFR
Ga0222711_10007297	F000379	AGGAG	MKIDYENKHGMMVGYIDGSQNVSAVQTGWDIKPEALSKLLLDKYPTREDAMQVVDSPLLVPVFKKDDYCYVDEFGDVIESNLSWNKEVMRKDVGHLFLFMKGTWQYSDNGIDWWPAKEAFVDTSDTAFTNIREALETEKA