Scaffold Ga0222711_1000090

Overview

Basic Information

• Taxon OID: 3300022837
• Scaffold ID: Ga0222711_1000090
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29479
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (70.31%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000060	Metagenome / Metatranscriptome	2944	Y
F003677	Metagenome / Metatranscriptome	474	Y
F011522	Metagenome / Metatranscriptome	290	Y
F028035	Metagenome / Metatranscriptome	193	N
F042572	Metagenome / Metatranscriptome	158	Y
F046634	Metagenome	151	Y
F050676	Metagenome / Metatranscriptome	145	N
F080522	Metagenome / Metatranscriptome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222711_100009023	F011522	N/A	MSNHQIKLFRAIINQAIHDAMYDGVYKYHIIDKREAIQWLTSDSIDFRTICSYAEIDASQATRKFTEAMKLDLYALRDDQNLVLNKPRKKYKHKGKFRLTFNE
Ga0222711_10000904	F000060	AGAAG	MASKLNTEFNYRYQVIGDTPWEKIKTLQGFLEGRIRAAALEEVGDLKDQAKVAKLKHLEENGGLQHEILELKAEILEGISHQPAAKESFELNQKEIKILEKLLEELYVIAEPTRIAGYSDEEMFEANAANEFTVNIGREIQAEMIANGRPSPAKLRNAMSNPYTWNALKGIGLIPKETKILEGNINPRDKIKLIGVEDEVI
Ga0222711_100009041	F003677	N/A	VGLSPYRKVVMIDESLCLFHNDVDKKVYEIEYEVTYVTKWQVIGEDQNEAMNKWLEEHKLDLSTEDGKDCVCSYAKDYTQISKVQEIAKIKYNEEDDEVYADET
Ga0222711_100009043	F050676	AGGAGG	MQTKLPVKSRVADKYKPMLTYYAELIGLCHETVAETQSLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSKINQQKEIA
Ga0222711_100009048	F042572	AGGAGG	MNRRLIVYKVQYRLNSDPWNRDKFIKTKRIIMTPDEVNQTDGYWRNHSRVSKKFFDQMETHESNEQGRYSIWSIKKA
Ga0222711_100009050	F046634	AGGAG	MTTQQTFIPYAESKSAEDRIAYVKANPGKYMPKAQYDLIKGLNAKIDALDSKMNEILAKK
Ga0222711_100009051	F028035	AGGAGG	MITYEMLQQVEGDTDKHSNYQLNQYEFPFPENSVLIERDKEMNRILNKPIIITTSNNNNC
Ga0222711_100009061	F080522	AGG	MIIGGDKGFGKTPKKKPSVFKKAAKTIVKKGIKFAVSPLTLGITAGTILYKGGKAKSFKYSNVRQFDKRGRKIT