Scaffold Ga0222654_1002319

Overview

Basic Information

• Taxon OID: 3300022836
• Scaffold ID: Ga0222654_1002319
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #421
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6454
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F014160	Metagenome / Metatranscriptome	265	N
F025069	Metagenome / Metatranscriptome	203	N
F025529	Metagenome / Metatranscriptome	201	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222654_100231914	F025069	GGA	MTLGLWGMSMANTITSFDIASASSIAQLVLSILGIVYLGVKIVNETLNGRVEREGKRIANEINNRELDEEL
Ga0222654_100231915	F000751	N/A	GKDYLLNLGVIIEVENEIVFAKNTAAVVYIGKVVKIPATYDDEGNIITPAIFYDGYAIDVMSSELLDFGTYEVYPADKAAHSFYGWARDAEVPKTQE
Ga0222654_10023195	F014160	N/A	MKTLKDSIQELAAPFIDWESDHDNEVLQQDFVEARLGEYGVEFSIYASRDVSYSHGTHFETEDVTLGDSHFNIEILAVFDQHFDDIEITDEEEDLLINVIANHYE
Ga0222654_10023198	F025529	N/A	MQGSKEYFLRVKEAEYFDLPQALRERSVVYYNDYELYKDDPSFKALNKAYRDAKKALENWKYDQRHG