Scaffold Ga0222654_1000499

Overview

Basic Information

• Taxon OID: 3300022836
• Scaffold ID: Ga0222654_1000499
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #421
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25631
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (5.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F010694	Metagenome / Metatranscriptome	300	N
F015230	Metagenome	256	N
F032718	Metagenome / Metatranscriptome	179	N
F052036	Metagenome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222654_100049914	F010694	N/A	MSIPVIFDNPHEFFEEATNQNYTDAHDLFYRSMVEYLLDESIQYVCTFIYNEYDKYHFEPLCDDDEQILSRDALLYFEYIEEYESCQLIFEVLNVED
Ga0222654_100049916	F052036	N/A	MELKTALNRLFDKDLDLNSKQQHILITIIGAHSRHEFKAGLQAAKELKKTLDF
Ga0222654_100049923	F032718	N/A	MIRALSPYYIDTPLVYGVTTCDKYTLNVWVWNGDKSTPDSTNSYQITYENTAASTGTHSININAIIQDYIEFKEPSPSLVAGVQVIDGDNQQWVYTFVTYDAVATVEHEATDIMTLGYAYGNEGRNVTAVTDNTLLIPQQYKVNIQGSFVFPIYVPITITTAESITVKSYPALNINYSATPAQSDLSDEVVKYLWIDISVATNESYIEIIWNGKTTTLDITNECRYTPLDTFFQNKDGALQSFTLFKKQEESINVTDSSFETNRGQASDGFHQFVRYGVQARTTLTAETGWLDEDMNEIVKQILLTERIWSFASGVYTPLNLKMTSQKFKTRQNDRLINYTMTFEKSYNEINNI
Ga0222654_100049937	F000751	N/A	MMQIYKTNFPTEQQGKDYLLNLGVIIEVENEIVFAKNTAAVVYIGKVVKIPATYDADGNILTPAVFYSGFAIDVMSSDILDFGTFEVFPADKAAHSFYGWARGAE
Ga0222654_10004997	F015230	N/A	MNDSGDITAKFTASEQAIDKLQQPTIEIERTRNAIRETEKRNEGVRAELEAIQKRIKKGYKAIRESSDEQQRIAEAQKEISRLGGLIAWQDNRSKQADTIIERGY