Scaffold Ga0222654_1000066

Overview

Basic Information

• Taxon OID: 3300022836
• Scaffold ID: Ga0222654_1000066
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #421
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 95373
• Total Scaffold Genes: 145
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (82.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 12

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009180	Metagenome / Metatranscriptome	322	Y
F028319	Metagenome / Metatranscriptome	192	Y
F043624	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222654_100006654	F009180	AGAAG	MKCVQGDFARIIHSVNPSNIGRAVKVVEYIGKFEAGEQFEAHSMTCTCMIHDHYWWIQGEDIDIQLGPSPKAYIADTWLEPIRPEAKKTKTKASKELDMFS
Ga0222654_100006683	F028319	AGG	MKPQEIADYKMNWMRTENNPVRLHSDLDTQGKTWCRRNLERQQWKINTWTNVYEHTFYFEFAEHAALFATQWPDFINQDSL
Ga0222654_100006696	F043624	GGAG	MSKIITYKVEDIFEDIEGDPENVNMNIPPEISERMGWTEGDILKITVEDGQISISKKEPDVKE