Basic Information | |
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Taxon OID | 3300022836 Open in IMG/M |
Scaffold ID | Ga0222654_1000066 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #421 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 95373 |
Total Scaffold Genes | 145 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 119 (82.07%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 12 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F009180 | Metagenome / Metatranscriptome | 322 | Y |
F028319 | Metagenome / Metatranscriptome | 192 | Y |
F043624 | Metagenome / Metatranscriptome | 156 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222654_100006654 | F009180 | AGAAG | MKCVQGDFARIIHSVNPSNIGRAVKVVEYIGKFEAGEQFEAHSMTCTCMIHDHYWWIQGEDIDIQLGPSPKAYIADTWLEPIRPEAKKTKTKASKELDMFS |
Ga0222654_100006683 | F028319 | AGG | MKPQEIADYKMNWMRTENNPVRLHSDLDTQGKTWCRRNLERQQWKINTWTNVYEHTFYFEFAEHAALFATQWPDFINQDSL |
Ga0222654_100006696 | F043624 | GGAG | MSKIITYKVEDIFEDIEGDPENVNMNIPPEISERMGWTEGDILKITVEDGQISISKKEPDVKE |
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