Scaffold Ga0224515_1003356

Overview

Basic Information

• Taxon OID: 3300022830
• Scaffold ID: Ga0224515_1003356
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - IR.F.S.T-25
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2598
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3533
  • Long. (^o): 19.0466
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002761	Metagenome / Metatranscriptome	531	Y
F003859	Metagenome	464	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224515_10033562	F003859	AGGAG	MDEQNAEKDTSSERTSIPGRSWPGASLHKSLKLGWRWRRLRWAVVAASEAAQGHEANGVRPGSQEFKTLYNELAKKVEEYSHESGDPMDTLKANLPALCAIERLAHPEPGVSQNRIGLTLGVMLSGVLGSIGIGVLIGLGTGMAHWIAHLFA
Ga0224515_10033564	F027079	AGGAG	VIKSFLNLCLILFLDMLAYMVAFVAAAAVAWAAVCGARWIFAAFRNSVMALRARQRKKEMCAHATR
Ga0224515_10033565	F025427	AGGAG	MRPGEMEELLASLGTCPIQKRGLFWRLLKLYWKKLLFIALMLVLPGGLIVLFLCATSWALNWEHEMTAYMDQTYKKWKEEHDVHSE
Ga0224515_10033566	F002761	AGGAGG	MTFTPSSTSSFTAGAVFWSMVWAGLGKLNELARFVGFKRSKPRESALRWINSHKVITLTATEVVNYSVHGVSSPLGVTFALGGTIVNVLMVAFVVPIWCRLSKLESRLS
Ga0224515_10033567	F039911	AGGAG	MKYTIAVVLAVVAAVAGYFGIRRLTRKDLGFTPVKRYASKLAKTLLHTEATAA