Scaffold Ga0222647_1002754

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222647_1002754

Scaffold Ga0222647_1002754

Overview

Basic Information
Taxon OID	3300022827 Open in IMG/M
Scaffold ID	Ga0222647_1002754 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #333
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3809
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022997	Metagenome	212	N
F059682	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222647_100275410	F059682	GAG	VQQSIESKRSQQAADEGLARELVYSYKWQAEKAPQWFGGVMDKLAKKYGQKYADDIRALMTLEKNRK
Ga0222647_10027545	F022997	AGGAG	MAKLIDFPIGLNEGESRLDFDPDEALTGAVGKLTEVVIVGYEADGSLYFASNRANGPDVLWLLKQAEQLLLAIEREMRT

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