Scaffold Ga0222693_115960

Overview

Basic Information

• Taxon OID: 3300022826
• Scaffold ID: Ga0222693_115960
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1331
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 928
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031722	Metagenome	181	N
F042665	Metagenome	157	N
F043706	Metagenome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222693_1159602	F043706	N/A	MRHILYGILSTALLVNLFAMALDTGQPSIWAIILCAVVIIFAGGGKQQHPH
Ga0222693_1159603	F031722	AGGAG	MHIDETATTQTQTQKVTKPMFYPEQAAAEKLGLNKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEFPTKFSPILWDADFVDTLASALHTQRIAMGDLKQ
Ga0222693_1159604	F042665	GGAG	MTPPKLSFATLILLSSVVTVVVTLGVMPLLTLTGLVSGSGLFFAPAAGMAAGYSAARWLGGYIDDK