NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222693_112824

Scaffold Ga0222693_112824


Overview

Basic Information
Taxon OID3300022826 Open in IMG/M
Scaffold IDGa0222693_112824 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #1331
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1074
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031722Metagenome181N
F042665Metagenome157N
F043706Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0222693_1128242F043706N/AMRHILYGILSTALLVNLFAMALDTGQASVWLIILCGVVVIFAGGGKQQHPH
Ga0222693_1128243F031722AGGAGMHIDETATTQTQKVTKPMFYPEQAAAEKLGLSKETLRHWRVGYTVTSKGKRYTYPPKMKDGEGTTWKKEYPTKFSPILWDADFVDTLASALHTQRIAMGDLKR
Ga0222693_1128244F042665GGGGGMTSPKISFATLIMLSSVVTVVVTLGVIPLLALTGVGPGWGLFFAPAAGMAAGYSAARWLGGYIDDK

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