Scaffold Ga0222669_1025440

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222669_1025440

Scaffold Ga0222669_1025440

Overview

Basic Information
Taxon OID	3300022825 Open in IMG/M
Scaffold ID	Ga0222669_1025440 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #730
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1081
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035635	Metagenome	171	Y
F046193	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222669_10254402	F035635	GGAG	VSGHAKMPPASHQVSATSLKLLIQQIHPHVRVERDSGMCVARDLYELWGRSPYTRMFVARTSH
Ga0222669_10254403	F046193	N/A	DTPIAPSLVKSSQVNTLPKAKSKTRSKQNKDMHKCSSVYSERGVPLPVLTSGGE

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