Scaffold Ga0222669_1000046

Overview

Basic Information

• Taxon OID: 3300022825
• Scaffold ID: Ga0222669_1000046
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #730
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54666
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (60.49%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009079	Metagenome / Metatranscriptome	323	Y
F013421	Metagenome	271	N
F013773	Metagenome / Metatranscriptome	268	N
F017147	Metagenome / Metatranscriptome	242	N
F018943	Metagenome / Metatranscriptome	232	Y
F020191	Metagenome / Metatranscriptome	225	N
F040659	Metagenome / Metatranscriptome	161	Y
F074760	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222669_100004619	F020191	N/A	MSNLENIKSLYQSSAYRDILHDINGVVFPFNPEWKNIGISVSGGADSALMSVLLCSIISQLKSNTNVHIITNVRCWKTRPWQKHNSLNVFNWITNSFPNIQFKRHENFIAPDLEWGSVGPNIQDEYGKLKSGNQIELRAHAEYVAHTENLDAWYCGVTKNPDKEFDGRLLARDIEDATLDRLIKIHMGGLACHPFTHVQKDWIVAQYKKLGIMDLFDLTRSCEGDNQTYPEVFGDLDYKTYVEGSPVPVCGKCFWCKEREWGVSKCQD
Ga0222669_100004620	F074760	N/A	MMLQKLETKTDSKILFDLVKHLPEGKSVLNKPTGNFFYDPWELLPEYKDTAIEDLLKQLPDHGEARVIVLKPGESYSAHADIDDRYHLTLDAEQSFLHDIGDEMMYATKPDNTVYLMNAGVLHSASNYGYKNRYQLVIRKRLQSNHMMKDPRQVVMTSKDPVYNLRYLFDSSFSILLNRLAKEQSIDSFARINEHTIKFLCDGSKINELLKMQQICGFKIDIVYA
Ga0222669_100004621	F017147	N/A	MHNWKHFYKHKQGLAVANMLYQPLVNEDNTVFCMNWNPNDYFENESMNEELYNFWFDQEVMYLSKLKDTKYIPELLDIDYAKREIKFKWYNKNLNVLIENNQIDSIPNWKEKIKQIKQDLEQQNIYKINMYPHTFYFDDNNEAHCMDLYGCTDNDNRYLDIKYLKPLIRTDRFDKFILNNQLDTHELYKETIKTNYAEWPGDFLNA
Ga0222669_100004625	F018943	GAGG	MRIAITGHTSPMGKDVYEHYSKTHQCLGISRTTGYDFTNTDSLNNTVSEVLARDVFLNIAHVGASQSSLLLKLQDRWTHDAPLRKVITIGSLATKVPKKLLDQVGIDKQYLKDKHHIDAVHNALANQTPFGPQLKFSLVRVLNYGEKTGDRSGEPTCTAQDITRTIDYVIDESMYISTLDVRRS
Ga0222669_100004630	F013421	AGG	MNNFKYYYNNVPGKGLCRNNLIYTSLINEDATEFCMWFHNDSEYHKGHNEVVDPVLMESKYYREKDFLLTLDVDHKNLIPKLTKIHTDEQKIYFEIQGVDFWEQSHGKTYEDVLPNWQDQMLYIMETHKKLGIYKYSLHPSSYFIIDGELRTINYFFAYRNNEPAITVQEHMSHISKERQQQLMPQMKKLGIEENKTYPFDKLQVLCLESFRNVYPDSFINKAISIYK
Ga0222669_100004651	F013773	N/A	MAKRILITGDSFGCEWPGGEGIGWPLILSKTHAVNNLAQAGVGEYKILKQLHDLSAHDSYWVNNYDCVIVCHTSPSRIHTPKHPVHKQGLHKHCDLIYSDLHDKVDWFNPGLKTAKNWFYHHYDDEYQKDLYQILREEINRFIPIPYLAVDNFSISNQFSFEKNTLDLTDIWHEHRGEINHYTEEGNQIVLKQIIDKLDKIC
Ga0222669_100004665	F040659	N/A	MAKKKKTIKSNKPGIVEKIGTWHSKIFTYVSYKARTSRLWAILLSALVIYELVEHLVFPWLVPLLAIKAFG
Ga0222669_100004669	F009079	N/A	MKKVTTGKNLKWLATAVLIIGTFINAGFPELYPVGPLLLALGGIIWLIVSFLWKEPALIVTNLVLTAMGFGGILLYYIK