Scaffold Ga0222646_118532

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222646_118532

Scaffold Ga0222646_118532

Overview

Basic Information
Taxon OID	3300022822 Open in IMG/M
Scaffold ID	Ga0222646_118532 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	788
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057927	Metagenome	135	N
F074457	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_1185321	F074457	AGG	MSINELIATNGKVWYKAGQLAERHRTIRIAQHISVPSEPAIGQPREMVFLDDLIEYLNDEDEK
Ga0222646_1185323	F057927	AGG	MIKNLNQKVTNDFKQAAGLLRHDLVWSADFKAIRLDLAEYLEVKSSLGLANHPSLINIAKKLIATDNDFTI

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