Scaffold Ga0222646_103178

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_103178
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3189
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008385	Metagenome	334	Y
F028621	Metagenome / Metatranscriptome	191	N
F072752	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_1031782	F028621	AGGA	MIKVKLEPFEVQLAFENSTKRYIENLKQGKGFSYGYTGGFEKQITDGVLGSLGEVAFAKGLNRYFNSSYSDSYARYTDSDMQDSIEIRSQKRKDNNFLLIRPNEKKAKYVLVIHEGDFEFSIMGWFPYKEDTEEMSKRLTDFGFSNRPAAYKVNINELNNMEDL
Ga0222646_1031784	F008385	AGG	MINKTNIYGDYKICIKCKNHADVIEGTKNYCVECWYLHINGKSIKEADQEIKEEERFKDK
Ga0222646_1031788	F072752	N/A	KKLFKLIKECLGIEKQDNSLIEPNRTEVVDLPEDLVINLNNEEGEENGKK