Scaffold Ga0222646_102905

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_102905
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3414
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017294	Metagenome / Metatranscriptome	241	Y
F022997	Metagenome	212	N
F040489	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_1029052	F017294	AGGAG	MTHQMHLNKSGSGMASSTACGRNILRTPMSANWSDFLSEPVQFRCIKCNTSKQFEVNAKSDARKAAQAV
Ga0222646_1029057	F040489	AGGAG	MTQEELMADSTQYCCYCGCEKARFQCCGENHFQTFAQMSTDEQDEFFQQGEEQWLN
Ga0222646_1029058	F022997	AGGAG	MAKLIDFPIGLNEGESRLDFDPDEALTGAVGKLTEVVIVGYEADGSLYFASNRANAPDVLWLLKQAEQILLSIEREMRT