Scaffold Ga0222646_101439

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_101439
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5692
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011754	Metagenome / Metatranscriptome	287	Y
F031870	Metagenome / Metatranscriptome	181	Y
F065391	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10143912	F065391	GAG	MQSFNRQHTFNTMPKQLGVIASGWSAINCESLSYDRTPEITRVREGWDG
Ga0222646_1014395	F031870	N/A	MEIIDYTDYMVLPCGGVAYYDEPRFGMNYFCAQCNTIVGSRDMPVECQNEEAKWELNKMLGGPGWDYFAEPDEFF
Ga0222646_1014398	F011754	AGG	MKIGFSFGRCVRDIVNGEVSIDDVAFIVAATSIHDRDQLDSVIANYMGRSDYLAGLDQAKCQQVAIDLWDSNKILQPRRQGLQRHKQPETSVWVDLFPTELSTNESVKKAWDAYRFMLHMVENVDTEALEIFK