Scaffold Ga0222646_100425

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_100425
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12258
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (9.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014810	Metagenome	260	Y
F037467	Metagenome	168	Y
F060412	Metagenome	133	N
F104107	Metagenome	101	N
F104108	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10042512	F014810	N/A	MSIFSDNAGVIFTAITGAISSVFLFFKGKKSRESNANIEIGKAYELMAKQNNAFILSMTDKIDKQTKKIEDLEFEVIGLRNENKLLLGQLKKYRK
Ga0222646_10042517	F037467	N/A	MNFIKELQSVLLLGLKTNVDAESINLENKLKADPNSITSSELRKLFYHAGIKSVTIGNTTINI
Ga0222646_10042519	F060412	N/A	MEVIREKIDVQLIFETYKVKMNDPNIKYGYFCIHVLCTSLTLVNGWKNSTHQMSSHKKAKVLSITGLLPDQYTKIITLNI
Ga0222646_10042522	F104108	N/A	MKDLTVENFENLNFAQDFSKKNAKKQGLELARSILDNGNVNPLEVMATLVRLSEVINTFQTELKAN
Ga0222646_1004258	F104107	N/A	MLQTIGLKRILDMKVTENTTVLSIFTQNVSGLYDIKVTNETSKAQTYSKTKSLTVEKYYFQITDVDGFNFTNENTYIIEVFVQNTADLVYRNNAYCTDSSSYNTEKRINSDNQYITL