Scaffold Ga0222646_100122

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_100122
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27695
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (77.08%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022997	Metagenome	212	N
F059682	Metagenome	133	N
F061580	Metagenome	131	N
F087930	Metagenome	110	N
F091440	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10012222	F059682	N/A	MQSIESKRSQKAHNEGLARELVYSYKWQAEKAPQWFRGVMDNLAKKYGQKYADDIRALMTLEKNRK
Ga0222646_10012224	F061580	AGGAG	MSAEKEIRRTNAWLQRRVRASQVPVDARPYIDYQYQSPQLWRNVLIKCSIVAAILFATGLVTYGLITLNLWLAI
Ga0222646_10012227	F022997	AGGAG	MAKLIDFPIGLDAGETRLDLDPDAVLTGAVGMLKEVVIVGYEADGSLYFASTRANAPDVLWLLKQAEQRLLAIEREMRK
Ga0222646_10012243	F087930	AGG	MIYNTGKVKIGLHYTPPVRPADIGRDMMLLQTALLAKPKTAWQRIARWLEIDL
Ga0222646_10012245	F091440	GGAG	MSFWLPVAFICLTSGNCGFANGKLTATASQCEATNYAVRQKLATDLDVASFKLVCIEIKKDEFI