Scaffold Ga0222646

Basic Information
Taxon OID	3300022822 Open in IMG/M
Scaffold ID	Ga0222646_100113 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300022822 Open in IMG/M

Scaffold ID

Ga0222646_100113 Open in IMG/M

Source Dataset Name

Saline water microbial communities from Ace Lake, Antarctica - #293

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28730
Total Scaffold Genes	53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (84.91%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

28730

Total Scaffold Genes

53 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (84.91%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Ecosystem

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Ace Lake

Coordinates

Lat. (^o)

-68.4725

Long. (^o)

78.188

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001864	Metagenome	624	Y
F017336	Metagenome / Metatranscriptome	241	N
F031511	Metagenome / Metatranscriptome	182	Y
F047170	Metagenome	150	N
F067452	Metagenome	125	Y
F105493	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10011322	F067452	N/A	MTKKKWSEIGREASAYFAPNYHLCQNYAENGSFLTVHKNIKASIHKNAQDSTIVECNFYDTNAIVTDWLQVLSNPLRLFRGLNDCKHYLFHPRQATFYTYTKGTK
Ga0222646_10011328	F017336	AGG	MTRACVVSHKSPMEANYGLLCAMCYDGLRSALQGAPNALQHLREIYVMRSPMELDTPKPLKKDPPAPFNLDAWQLAEDMWQALTGGYIPVKWNHFQIYGKAKEICQALHQDIDNLVNRKEVIYLMPLVKTLGQALYRYPLEEKSRTTLLPCPSCNLKTVYSPPAEFGDDLQVKCHSCGFVIPPEKMAFYANLAERERA
Ga0222646_10011339	F105493	GAGG	METPKEVIRELEKIRNQSEQGIALLAEAEIKYLELASAADRVEATELLSAQGTIVDRQAVAKLKAMDVRFEADLAKVELNRIKAKIRHLSESQMAVMAAGKLIQMEWRG
Ga0222646_10011349	F047170	AGG	MTKKKNTPNAEFRDWDFVPADEFLPPQKPATHIMAERENILTVAQLHLPEGMTRHEYALQLMKLNTSFAVGRIINLV
Ga0222646_10011351	F001864	AGGAG	MTRYRFEIDTDNAIRIWDNELPNENDAPFMFQPDWPDVTPWADAAEATDWAEVFIASLVDPLSEFVAGNSPDTHPAIRPEPEPEIAPE
Ga0222646_1001137	F031511	AGGA	MASRIPGGGSVTLNRSGMRDLLRSSAIQNMLSGRMERVKAAVPGSQLEVSAGGNRARAKVINGSDYDEANTGDLSRALDLAGGDRGTQVKTRKPKPRT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0222646_100113

Overview

Ecosystem & Geography

Associated Families

Sequences