Scaffold Ga0222646_100104

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0222646_100104

Scaffold Ga0222646_100104

Overview

Basic Information
Taxon OID	3300022822 Open in IMG/M
Scaffold ID	Ga0222646_100104 Open in IMG/M
Source Dataset Name	Saline water microbial communities from Ace Lake, Antarctica - #293
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	29583
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (71.43%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Ace Lake
Coordinates	Lat. (^o)	-68.4725	Long. (^o)	78.188	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000649	Metagenome / Metatranscriptome	960	Y
F022997	Metagenome	212	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10010422	F000649	GGAGG	MSKNQTHYTPDGKLYKGGTHKVGGTLMTGAKHTPTSKVLTHTPPKKKK
Ga0222646_1001043	F022997	AGGAG	MAKLIDFPLGINEGETRLDLDPDAVLTGAVGLLKEVVIVGYEADGSLYFASTRANGPDVLWLLKQAEQRLLAIEREMRT

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