Basic Information | |
---|---|
Taxon OID | 3300022822 Open in IMG/M |
Scaffold ID | Ga0222646_100065 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #293 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 40265 |
Total Scaffold Genes | 65 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 39 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003268 | Metagenome / Metatranscriptome | 496 | Y |
F004276 | Metagenome / Metatranscriptome | 445 | Y |
F026214 | Metagenome / Metatranscriptome | 198 | Y |
F027425 | Metagenome / Metatranscriptome | 194 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0222646_10006522 | F004276 | N/A | MFSPIGAPNNEDQDIDWLDDLKFFIDNDDVMLNRHFFPAVKRHKDYQGHPNAYKVYIRPIERCKDAYCSKYNVEEPENKFPKEKIIQLAKMIAGEQEQHLTSGDYDN |
Ga0222646_10006534 | F027425 | N/A | MIKGLQGYNGVTVNSGNTVLPYVAPNAANPMMGMLRINGTDIEVFNGSSWQYLSTSYATVGLDQDILDIVQWVRKKRDEELKLHSLANDNKAVKIALDNLEQARQQLDITVKLWREYEQTTS |
Ga0222646_10006542 | F026214 | AGGA | MAKNYRDVAYFKNRPDIVRIFDDLEAFQDFCRMELREFDPAEIYRKEGAPNYGAFLASKRPRRPYLGKNPRWDNNGKRNEQNFSR |
Ga0222646_10006554 | F003268 | AGCAGG | MSQSNLPTNLPSVEKLIQRVVAAERSQQKDIRISIQEARDLTAELAIMTSKLGKTVQEIHAMLSVIKESTTNIDVKFDGGGFN |
⦗Top⦘ |