Scaffold Ga0222646_100042

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_100042
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51575
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011759	Metagenome / Metatranscriptome	287	Y
F052951	Metagenome / Metatranscriptome	142	Y
F076076	Metagenome / Metatranscriptome	118	Y
F086659	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_10004221	F052951	GGA	MKANEFIFEDDEELYTETAKMVWGVGKHTARGGTTKLKFRCSSGPRKSRQVSHPSKCHQPMDMAQAQKMKTTRARTAPQAARRTQRTKSINTASVLANRLNTNKPKQPKPYR
Ga0222646_1000424	F011759	GGAG	MKEDLITDIWTIVIEHIPEKARKDVAADFVNALLDHGIKESVLESLMGVDPYLDQAIEYAVDGEEIEEQDEEDYED
Ga0222646_10004243	F086659	AGGA	MPTVFRHALVTEIGTVPQDLVTIDAGVRATVIGCNLANITDYDTVVADLQVVGADTTVSYYIRGLVIPPNTSVKVITQGEKLILPSTTGLRLVCDTPDSIDATVSYVEIS
Ga0222646_1000429	F076076	GGAG	MADLYGTTAGGTAVNVDANARRVLGDGAAGVGPYTSFGTPTLTAIKIVSATINFTTTPTVANSNMSKALTGLQSRAEIYYAGKPTASGANQFVALIHSEDTGDGYGASTSFDGSYENLEDAIGAALGVAENDITITEVALTGLSFA