Scaffold Ga0222646_100014

Overview

Basic Information

• Taxon OID: 3300022822
• Scaffold ID: Ga0222646_100014
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #293
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 110086
• Total Scaffold Genes: 165
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 119 (72.12%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002502	Metagenome / Metatranscriptome	553	Y
F029288	Metagenome / Metatranscriptome	189	Y
F037979	Metagenome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222646_1000141	F002502	GGA	MSNATLTVGSQFTTAKSGVTGVIQEVIQNKNGTSRVRLDVSGQPRWTTVK
Ga0222646_100014139	F037979	AGGAG	MSFLFIGLDGEMSSSELAEGGKLIQIGLSTEDGYQISMNMNPGECQWSERAFEVHGITLESLQSAPLPDEVDSQVYDWLIAVGVDTNSRGKTIPVGFNVGAFDMPFVKDSLPKSYSLFSRRTVDLNALCFALDYKEENGMPVKSATWKKRAKAYAIEKIGMENQHDAGWDSLMHIYCFEFLKGAMR
Ga0222646_1000148	F029288	N/A	MSKLGRYNEARRKVESQALFYNILKNPHLVAQVDKYKGSRQSNNYKAIKESRSDD