Scaffold Ga0222673_1010831

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1010831
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1562
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026714	Metagenome	197	N
F043088	Metagenome	157	N
F054920	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_10108311	F054920	N/A	GMYYGNLDFDPLEIMAFRNGHTKMFYKENGKWQPL
Ga0222673_10108315	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDVMAIRKEQFPLLHYTVGIISKRLEETHNRMITDVDPNTCDISTLHLNSQTIE
Ga0222673_10108316	F043088	AGGAG	MKRLEGIYRGYDIFEKDNVWKIELEGKTITTFNKILDVDGKASCMTEIDRIKREEYHERERNVQRVDAQVKATRDGGV