Scaffold Ga0222673_1003641

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1003641
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3825
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032444	Metagenome	180	Y
F047919	Metagenome	149	N
F058446	Metagenome	135	Y
F066150	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_100364110	F058446	AGGGGG	MPNKLIEKIRSYLKEIDLESLQHKYQDQSTNDDFIQYEPLPQIYIDSLDDSNKEKMLQEIADRNGF
Ga0222673_10036414	F032444	N/A	MTKFKTKIQYVSWNDSVVGSNKKADIKKTKLENQGYILKATQAGLFSGLMIYENQNYKKG
Ga0222673_10036417	F066150	AGGA	MKILSNHELKDMGQPIKETDCWLFFEKGKIAKHTIEKFHKKNEIERFRAELSFNKHQPINNTIN
Ga0222673_10036418	F047919	GGA	MTQINEKMDQAIECDDFDKIESIALNPKNALVRIHEFNMFTGQGRFVNKWVDVSNVFKDLWDDLNSDCHDYIMDLAKYKNMEYDAMVEDYDNTTYNWIKKTDAWNLKSFGLNYSQ