Scaffold Ga0222673_1000570

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1000570
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15767
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (50.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F046685	Metagenome	151	Y
F064414	Metagenome	128	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_100057015	F075727	N/A	MERLNKKGWVARDFIIAMLLFSGTLAMFVLMIGSLASDYDNTDVVDAEFSAKFDKFSEDTDRAGEMWESATSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGQQMAGFGEFFGIPSEISSIFMVLIFTILTVSIVFIIISSIRSGKEL
Ga0222673_100057016	F077915	AGGAG	MAVTDYYVAPTGNETSGLFELSKYIGISATAGLFWPVMLFVIWIVSFLGFKQYSTSRAWTFASFFCSILGIFLVVLNLMAPRWMYLCIFLTLIGLVWLKLEAQ
Ga0222673_100057018	F007072	GGGGG	MELSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTENSVAYNVTGDLQTEISNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV
Ga0222673_100057019	F007072	GGGGG	MKLSKLGKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYGNSIAAQQTLTATCNNTLNGGTGTVYSGCGSAYNTTVDLQTEISNNTSIAGIVLTISLVGIVLTILIGVFIGVRGGTAR
Ga0222673_10005702	F046685	N/A	MQEQTNPQYQSIPVSSDELYANAVQEDKIKNIISQLDPENQLKEIEMRIRGYKKNVFTHDWEKIDADAKEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMAQAINYIADELDGNSNIYDLDNNYTERTRIGHIMLNSMFFTLNRSLNGQEGKRMWKAMSLSDNLTQENNKFSEALKFWK
Ga0222673_10005705	F064414	GAGG	MGFGEIADKMPFVGGGPGIASDAMYSIIGITVLLLCGFALWWFLKKRKTWNIKVEFKIPRNIKKVKTKAGLIKIIGTLNKEWGKGFYDAVKGSVFIKRKGKKPVAMKPFDVKQYLSTGNILTVVQIGIEDYRPIRDESYIELKDVNGKEGALVQAVIDTSESKSWKNTFERESKMTYSIKNWIAEHGALVAMGLVLLMNLIGFSIVIGRMPK