Basic Information | |
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Taxon OID | 3300022821 Open in IMG/M |
Scaffold ID | Ga0222673_1000376 Open in IMG/M |
Source Dataset Name | Saline water microbial communities from Ace Lake, Antarctica - #801 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21397 |
Total Scaffold Genes | 38 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (55.26%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Ace Lake | |||||||
Coordinates | Lat. (o) | -68.4725 | Long. (o) | 78.188 | Alt. (m) | Depth (m) | 13 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F046685 | Metagenome | 151 | Y |
F064414 | Metagenome | 128 | Y |
F075727 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0222673_100037613 | F064414 | AGGAG | MGITDITSKLPGMGPGGNTNIIYVIIGFAVLAVCGFGLWWFLKKRKTWNIKVEFKIPRNIKKVKTREGTIKIIGTLNKEWGKGFYDATKGCVFVKRKGKKAIAMKPFDVKQYLSTGNILTVVQTGIEDYRPIRDESYIELKDIDGKEGALVQAVIDTSESKSWKNTFEREAKMTYSIKNWVAEHGALVAMGLVLLMNLIGFSIVIARMPK |
Ga0222673_100037617 | F046685 | N/A | MQQQPDSQMPYQSVPVSSDELYANAVQEDKIKNIVSQLDPENQLKEIEMRIRGYKRNVFTRDWEKIDPDSPEPPKLLISRFISYLSSIMNQNTTQGNLSDRQINALMSQAVNYTADELDGNSAIYNLDNNYTERTRIGHIMLNSMFFTLNRSLNGQEGKRMWKAMTISDNLTQDDKGKFGEALKFWK |
Ga0222673_10003768 | F075727 | N/A | MMKKINKKGWVARDFIIAMLMFSGVLAIWVLMIGSVANDYGNTDVIDPEFSEKFDKFSEETDRAGEMWEAATSEGGLSLVGAADLLFFSTFKVISLVFNSVVAAGQQMAGFGEFFGIPSEISTIFSVLFFTILTVSIVFIIISSVRSGREL |
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