Scaffold Ga0222673_1000118

Overview

Basic Information

• Taxon OID: 3300022821
• Scaffold ID: Ga0222673_1000118
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #801
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47643
• Total Scaffold Genes: 67
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (14.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 13

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022145	Metagenome	215	Y
F034486	Metagenome / Metatranscriptome	174	Y
F044785	Metagenome	154	Y
F054439	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222673_100011828	F022145	AGGA	MKAREIKKDNYTVQIGYSKEANKKKLLKFISKSGDEFEISAEELSSMLIGGVNQDTLEATFVDSKKINVVEVGRQLECVLDRDMKKGEKINMNYTHPYPLEFAIIEQVWGIAKIKADTPVFILTKEYIEETKKKLKPEQDEFIGKFYRSFKNVDLNKK
Ga0222673_100011829	F034486	N/A	MSEGEQSMKQRKMTLAASEHAPVIIELMKDCMSQSPIVGKTEWDTIVNAITLETQGTMLRSMVDLMEDIRKGKLHEDNSKDK
Ga0222673_100011835	F054439	AGG	MFIKQRGSTMKQMAYAKRILGGQGETKKQIALNSGYSPNVANSVSSHIENKPGFHNAMTALAVDSNNLALAAMHEFKARGFSDFSNKDLIGALNAIGNAWSKFNAQPKDKDPSAAGNKLRTVVLQQIENQTVVAPVADATASEVKKEVVEVQDVEKELDF
Ga0222673_100011862	F044785	N/A	MKKEQKWNTLLNQYLREKKFYCYYELKQTMTESFQFGKIEKVQWEGLQSTEKNGLVWKLSDEISRPKPCDGVSIPPLPSYLIIKFKDEFCCIRFNEILKLREEGVISISRLTAEELSEIIIKI