Scaffold Ga0242701_117972

Overview

Basic Information

• Taxon OID: 3300022788
• Scaffold ID: Ga0242701_117972
• Source Dataset Name: Microbial communities of marine sponge Cymbastella coralliophila from Great Barrier Reef, Australia - CY13 Version 2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of New South Wales
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1375
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Porifera → Sponge → Unclassified → Unclassified → Marine → Sponge Microbes In A High Co2 World

Source Dataset Sampling Location

• Location Name: Davies Reef, Great Barrier Reef, Australia
• Coordinates
  • Lat. (^o): -18.833
  • Long. (^o): 147.683

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016734	Metagenome / Metatranscriptome	245	Y
F036473	Metagenome / Metatranscriptome	170	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242701_1179722	F016734	N/A	MNEDKINKLGLTDSERDAIDHEPKRSLIDLDTYQQTDVLTLQGYQLRAVMDDIVLAQYVDLSDDDRCLNRNGVLIPLSQVQRTWRLARVILAGSGCKHTKRGDIVCFPDDKGVRVDNLRVKGYEDPLRHCLFLNEQRFFGICEEL
Ga0242701_1179723	F036473	N/A	VIVSLIHLKGELLQKVCEVRFMRRRTKRGSSILRRMLCTNNEQLLNSIEGRTALNYRPTRGLLKYNPNQKNLLVTWDIMMQDYRQINCDAVDLITTLDADDTFWSYLSEHIAPMSAQDKINFHNT