Scaffold Ga0242730_1072820

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0242730_1072820

Scaffold Ga0242730_1072820

Overview

Basic Information
Taxon OID	3300022765 Open in IMG/M
Scaffold ID	Ga0242730_1072820 Open in IMG/M
Source Dataset Name	Microbial communities of marine sponge Stylissa flabelliformis from Great Barrier Reef, Australia - S11 Version 2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of New South Wales
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1198
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Porifera → Sponge → Unclassified → Unclassified → Marine → Sponge Microbes In A High Co2 World

Source Dataset Sampling Location
Location Name	Davies Reef, Great Barrier Reef, Australia
Coordinates	Lat. (^o)	-18.833	Long. (^o)	147.683	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013612	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0242730_10728201	F013612	GAG	MMSLPAMSLGGTGGGGCVHPKGANSMAASGLVFRSDLVGTGRAISILFGINGVRNQQSHLVGPPFPEFKARFSATAGWHFSRDLTRRLV

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