Scaffold Ga0222622_10018332

Overview

Basic Information

• Taxon OID: 3300022756
• Scaffold ID: Ga0222622_10018332
• Source Dataset Name: Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3511
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9201
  • Long. (^o): -106.9487

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002070	Metagenome	596	Y
F023287	Metagenome	210	Y
F054653	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222622_100183321	F023287	GAGG	MTATTDRFGPHRSREELRLVELASGLLLLLDAHRLTGRLPLEVQVQTSRLRHAVKLAVQAEATRTTTLPPTPQPATSRDQTATLRAWIAAQPWVQPGPVGWVYLLCFRDPTTGQHRPLQGKGCRGQYAGHYWGWTDDLIRRITKEHRNPRWRGAGRLVQVALEAGLTFELAWLEYPATRGRERRLKNQGSAYRR
Ga0222622_100183325	F002070	GGGGG	VTHRVDQLACHVRRLGNHELNELLIQLPTPCFAGLVEVALARPVLSAGLVLRFEPALGVDGWTVVACAPRRQLGTLTRDRHPSGRLVWRAWTRAGQAVQLTGISTWRRRGDAAAALAWVTPVSGARCLALAAYVRALPDSALHQLLSRLPQEWFDRLLDAAYQPAGSAA
Ga0222622_100183326	F054653	AGGAGG	MTIPHLSPTVPGSGSVLDGDPRILIPLPEVADRLGISRWQAYKLARSGRLRTTRLGARDLYVPAAVLRRIEHEGLPPAPESHGGELA