NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0216341_10298362

Scaffold Ga0216341_10298362


Overview

Basic Information
Taxon OID3300022753 Open in IMG/M
Scaffold IDGa0216341_10298362 Open in IMG/M
Source Dataset NameGoat fecal pellet fungal communities from Santa Barbara, California, USA ? pellet 3 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1389
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin478(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056212Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0216341_102983621F056212GGAGMTFRKFAEIAAAHRPDAVVHAHKSFGGVQDVAIYFKHPDGRKSRVYSYRGSYADILNRLGVKVITQTDVATAEAQLRMAKKAHGKPSLFGKGAIRDCSEEIAELTELLRRYRTDEFVRDW

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