Scaffold Ga0214917_10188020

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10188020
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1035
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F018913	Metagenome / Metatranscriptome	232	Y
F085690	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_101880202	F000919	GGGGG	MRFRNIEFRWSKYNNKYELLRWYEDIPGKEICYVIAFFDKGKEGYDLRTVGSRFFEDKDAWVVAKYGLEFLNAIFQIEQDEEELK
Ga0214917_101880203	F085690	GAGG	MNYLITYYYKNDTEQRHQRHKTMQMAIATANLLIAHGDYVIDSITTEYGETDDETLQSSYELL
Ga0214917_101880205	F018913	AGGAG	MTTNKERAEELLKVICKSEAHNTAWMLQEVLQHLRKQLSRTNKIDFTDELDVMFNAGWDEILKEIDAICDELEAL