Scaffold Ga0214917_10129708

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10129708
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1382
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011918	Metagenome / Metatranscriptome	285	Y
F039993	Metagenome / Metatranscriptome	162	Y
F041081	Metagenome	160	N
F066588	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_101297081	F011918	N/A	NKKYNTPPFYPTDAQQLWAYRNASENPKAACVSVVLASNDPEYIEHHQWDEDELYQAGIAFCAMQKVWAWVKGYTPPGMKL
Ga0214917_101297083	F041081	GAGG	MIMEDVSVDFEFNGEKYTAYGNAEIDAITEDIGPVGYREHCFAKVVNNVTMSKIEISTATEDIKNPSKELLEKADDLLSIQATEDFDAGK
Ga0214917_101297085	F039993	AGGA	MKLALSWIFYHIGNITSLTLMRLGHGYGFYNRMMIWSSALDKHGKIWKDAK
Ga0214917_101297086	F066588	AGGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHSCDFILIDKPLTHPAQYSKSAIGNIMATKGYSQVTFVDADVL