Scaffold Ga0214917_10115911

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10115911
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1510
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002827	Metagenome / Metatranscriptome	527	Y
F005146	Metagenome / Metatranscriptome	410	Y
F052570	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_101159111	F052570	N/A	KLPEGVELEILDYDAERKDRQDSAFYTWGDTNDVALLTYQGREYRVVCVGEMRIFYKGKIIRYCDDLVGAGIKCDKDLSKIDDSGGEWINNSWFEVYDYGSGEYTGEVYHEVKDAIETVANWIVDEELVNA
Ga0214917_101159113	F002827	AGGAGG	MNKEYYQAKADLCRDLAIKQMVEGEAGEAGKNLIRMVNALNEINLINYKEEKDNEPR
Ga0214917_101159115	F005146	GGA	MKPVNFYEVQDRKGEVEWGGASVSEAITWFRRGLDRSIFVSVWNEADIENPILITDKIDITAIVLATITSEREKA