Scaffold Ga0214917_10103671

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10103671
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1647
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003304	Metagenome	494	N
F011281	Metagenome / Metatranscriptome	292	Y
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_101036711	F011281	GGAGG	MNEFKQKVLTASVDRYVLTKTQCEMLRQDAEIIGMKRAPVLSKDGVTRTVSRTRTCSSCWIPFAKHYEWIYNVMREITEGINAEQWRFDIQGIQQL
Ga0214917_101036712	F020665	AGGA	MRKRKAGKYIDVVKTEECKSVKITVNVEDDLYEAMVDAGRQHIVKDKTACFEYALNKALLEMLEELK
Ga0214917_101036713	F022371	AGGA	MFCLLDLAGVVWVISWFVLYSWLTLSAIYCAGYLIFKLIEIIRKELDL
Ga0214917_101036715	F003304	GGA	MKQALVTQSFGEDWQKIIDLTRPRMEAYCKRHDTDFILIDKPLTHPAQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSEDAGVFCAFDEGAYLDRKPEMVKLAGAFGGVIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKADEAKLVELGR