Scaffold Ga0214917_10097322

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10097322
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1727
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033721	Metagenome / Metatranscriptome	176	Y
F039993	Metagenome / Metatranscriptome	162	Y
F039994	Metagenome	162	N
F066588	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100973221	F066588	AGGA	MKKALVTQAFGDKWHKVLELTKPRMEAYCERHKIDLISIEKPLVEPVQYSKLAIGNIIATKGYEQ
Ga0214917_100973222	F039993	N/A	MKIALSWLLYNIGNILSYGVSRYGYGYSLYNKIMLLSSDLDDKGIIWKDVK
Ga0214917_100973224	F033721	AGGA	MRWIKKELDEEGKPEWAVYIDNAGEGNESEWSHFDTYKTRDDAVQACRHFTWEDYDCSDK
Ga0214917_100973225	F039994	AGG	MGKGIYPARDETLMENPPTIEEMGNAASEIVWRVMGNGSAKSAYGEWFWKDRPVFDYHITRCIKHAVTAQQQIHLNHPNPDEAGENSLDHLERAVVRALFAWMQLKKGLPRL