Scaffold Ga0214917_10090639

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10090639
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1824
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000919	Metagenome / Metatranscriptome	834	Y
F013514	Metagenome / Metatranscriptome	270	Y
F030059	Metagenome / Metatranscriptome	186	Y
F057309	Metagenome / Metatranscriptome	136	Y
F085690	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100906391	F000919	N/A	FRNIEFRWNNYNQKHELLRWYEDIPGKEICYVIAFFDKGKEGYDMRTIGDRFFEDKDAWVVGKYGLEFLNAIFQIEQDEEELK
Ga0214917_100906392	F085690	GAGG	MNYLITFYYKNDTEQRHQRHKTMPMAIATANLLIAHGDYVIDSITTEYGEEEN
Ga0214917_100906395	F030059	AGGAGG	MNETLNKNLTLIQEVANKALQEYIKSTEPKDRFSGVNYADLQVVDVWVKYSLYDEDAMYGVLIEECSPTAYEFREYMVEYLKDNLPNDLGWNVYVELEW
Ga0214917_100906397	F057309	N/A	MMNPLLQKYEELYGKKEPPKMPRIEDYEGEDTFADELKKPKPRKITTYDPDSVNVSFQQIAEKVKNGEAQVSSMSMEMDIMSGTKITFEVMLYEP
Ga0214917_100906398	F013514	GAGG	MNLEELQKYLDDHNITFEEYMRANMITDEERKYIDKIWMDAIYKNLGEDT