Scaffold Ga0214917_10083290

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10083290
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1943
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F030670	Metagenome / Metatranscriptome	184	Y
F034827	Metagenome / Metatranscriptome	173	Y
F078229	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100832901	F027756	N/A	MKLKDLIDRKILYLNFPINRHAIQEGKVSEISPTEKCIKINNDWHLISNIRIIELFSEKE
Ga0214917_100832904	F030670	N/A	MKVIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDLIDAKLLKTFPSPYHARNWMENDGKNN
Ga0214917_100832905	F078229	N/A	MSKSKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADDFLNNYESN
Ga0214917_100832906	F034827	N/A	MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIRVPNTTSVNIIDLGDGKAYDFSNKKRNSINDPDEQQGNRVYKLNAKINIVVL