Scaffold Ga0214917_10080133

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10080133
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2000
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002826	Metagenome / Metatranscriptome	527	Y
F007741	Metagenome / Metatranscriptome	345	N
F020665	Metagenome / Metatranscriptome	222	Y
F022371	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100801331	F022371	AGGA	MFCLLDMAGVVWVVCWFVLYSWITLSAIYCALFIIFKLIDYIRKELDL
Ga0214917_100801332	F020665	AGGA	MRKRKAWKHIKLLKVEEYDAVKITVNVDDDLYEAMAEAGRQHIVKDKNACFEYALNQALLQLSKEIK
Ga0214917_100801336	F002826	N/A	MLVESKARLKWGRDILLIARDKLAIERDRASHGRVIDIIQIITMVDAAALIAKEILEDNK
Ga0214917_100801337	F007741	GGAGG	MKLWTNNTNAIHKVDDNMLYPRNTYVLPDELTGPTWDDSIPCPHKIKPYWPGRAAGGATAVYRAGAIGDAIIATAFVNYLVQESGGVVEVYAPARNLPLYAGLGAKLWPLPASLEAWDSFDAHLPTDDLFSGQVGNTKLGTGPGNCYQRIY