NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10071963

Scaffold Ga0214917_10071963


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10071963 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2167
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004760Metagenome / Metatranscriptome424N
F010449Metagenome / Metatranscriptome303N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100719631F004760N/AMPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLFKGYYRQEQKLGSRFRSQYTPDSIKRATLRRKIK
Ga0214917_100719632F010603AGGAGMSDEFKRNPLKAKNRAIRINSTPFANVLEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0214917_100719633F012569N/AMSRALDKFQGQYGFSVGTQGTAPAGYWAIQMLADTTFSAISGKYDGTLTGVTIGSGNIIYGEFNSYTAGTGRVIGYIAG
Ga0214917_100719635F010449AGGMSEEQVWNMEVRLARMEERQVQLYAMIERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN

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