Scaffold Ga0214917_10071963

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10071963
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2167
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100719631	F004760	N/A	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLFKGYYRQEQKLGSRFRSQYTPDSIKRATLRRKIK
Ga0214917_100719632	F010603	AGGAG	MSDEFKRNPLKAKNRAIRINSTPFANVLEFTASSSGGTVNTVATAPASLNVTLNGTSYRIALHS
Ga0214917_100719633	F012569	N/A	MSRALDKFQGQYGFSVGTQGTAPAGYWAIQMLADTTFSAISGKYDGTLTGVTIGSGNIIYGEFNSYTAGTGRVIGYIAG
Ga0214917_100719635	F010449	AGG	MSEEQVWNMEVRLARMEERQVQLYAMIERSLAFHGDVANRLSALEHLRTKVLAVAGLIGLACSMAWDVLKNRLSN