Scaffold Ga0214917_10061921

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10061921
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2425
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (36.36%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016800	Metagenome / Metatranscriptome	244	Y
F019061	Metagenome / Metatranscriptome	232	Y
F032252	Metagenome / Metatranscriptome	180	Y
F048267	Metagenome / Metatranscriptome	148	Y
F074866	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1006192110	F016800	AGGA	MLDAFTDYPIPSYDDVAGKKAPIRKATILTYDRNKYCDVLVYQVDKDGDLRGTVVNFKQFYLYKNEARLDDGIQFTYEELKTLPWTEISFPHSI
Ga0214917_100619212	F019061	AGG	MTEQPTDTEILEFLLNQFQAHSLQMNGESAWVFMNSGFPMNRARGKSARDAVINAMEAK
Ga0214917_100619213	F074866	N/A	LELFELLVLEMNEMTEIKTCRNCKYYKDYEGVFDWISSRIFGYPTLQKCYHPNRWKNVDYVDGTVYPYTTCYAERNYGPCGKMGNNWEAKDD
Ga0214917_100619216	F032252	N/A	MKLYRYKKDGYLYTLYEQWRPFYNLVAVPYFPNQGVLAKSKRSISMNDFIVVAER
Ga0214917_100619217	F048267	N/A	MTDEEWEIALKSMNEGAKKWVVEEIDKIKYNIIKDIISKELK