Scaffold Ga0214917_10059903

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10059903
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2487
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F041730	Metagenome	159	Y
F044450	Metagenome / Metatranscriptome	154	N
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100599032	F044450	N/A	MKAQILKSMIVDGRKLVAGDIVEVKGWRHAKSLANNRYIKLIEDDVVEEKVAEASKPKATKKTKEVAE
Ga0214917_100599033	F024770	AGGAG	MAVSHARVSVGTTATKLTSDYDGKDGQTISVQVPSAGATVYLGGEGVTTSSYGYELLGGTSFSVELQDDEKLYAVVASSTQTVNIFRQGT
Ga0214917_100599034	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTENVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALGSAEAAAYVSVDAYQALLTRYNNAENIRVLVVDADEEAIDASTYASDASKAAGALSNFNTNQLMMMG
Ga0214917_100599035	F056549	GGAG	VAEPYVPIARYNTANTLLTELEVTTNNAETYTDDLETAVSNSLTHKQTAENLVAEKFDLFFLVGC