Scaffold Ga0214917_10051333

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10051333
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2783
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006844	Metagenome / Metatranscriptome	363	Y
F019320	Metagenome / Metatranscriptome	230	N
F019826	Metagenome / Metatranscriptome	227	N
F084233	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100513331	F019826	GGA	MRRSIRLGVSKEEKVAGRITTLLSDFTLDLEAIGFYLAKGSPHIIYTRANEVLEAMQYNKEVDQLDRGVYNGRR
Ga0214917_100513333	F006844	GGAG	LAKWEVEVIFEPTGDYMNFEYETDNEDEDSIFNEISNQLSIVPNLVEKNEEE
Ga0214917_100513335	F019320	GAG	MHTLHWIATKAKDRQEAFDIVTVSLMPNEDGNRMADWSDWHVVGGGRWSDSAYENSSDMIISYAEKPDEFKKTIEDIKRYRINYMNDKLTKLDNAFDNLKSDVVDYISNDCKLNDNRQFDFSRWNITEAIDMINSKWTCDSAFFDHNEFTSSFQYLEERLDKPEEAALHYLVPVDFHF
Ga0214917_100513338	F084233	AGGA	MTLTVEIYEMDYSCSPGGVNCWEVTTNHDLCVSDFRTAGDALQWVLDKYPNHELNINVKSLNWYFKEFADEYAV