Scaffold Ga0214917_10045136

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10045136
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3062
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010832	Metagenome / Metatranscriptome	298	Y
F013404	Metagenome	271	Y
F017612	Metagenome	239	N
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_1004513610	F013404	GGAGG	MTTILDAVKKLDETIAKQKNIANKLAEEHKQLQEALAIVCCNADEDCPLEYRTEHFKSAITDGYNLLTKVGYFKNKKRVNKWDT
Ga0214917_100451363	F010832	GGAGG	MKDVRYVIDWLEEELAHFEMAVEQHNYVSKADEIRYRMAQELLAWILEYKFDPKFSVSRETCDNNKEAR
Ga0214917_100451367	F017612	GAGG	MSIPDVDVPIGFLYETTLMKYASGQLTKDGMIMSPEDALEHFKQLAIDEGFAESTIENSAEELLYDLEDIEEQKYQEYLEEQQ
Ga0214917_100451369	F029676	GAGG	MGHLNKIFYNYMTEQDAWDEYLELIKEDEHFAEQWTNTRNDFLDWCEADDIVLVDNKQLANELEEAQLQ