Scaffold Ga0214917_10042951

Overview

Basic Information

• Taxon OID: 3300022752
• Scaffold ID: Ga0214917_10042951
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3171
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F016800	Metagenome / Metatranscriptome	244	Y
F058096	Metagenome / Metatranscriptome	135	Y
F084145	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214917_100429513	F084145	N/A	MFLSCPVSFDLIDAEWYQDVDDAKEDALDWSVELSGEKVIVYQALEGEDGEYEFQKLCAVCA
Ga0214917_100429515	F058096	N/A	MNRNLSVDECKVLWVVGAAERLATLGMLSPDIPLRLSSDAVDNFIQIDNHRDILFKSDFEVASIFNELAESENAEEVAPEDMRQIVHLILEYKNNRTQLVKYALSHQTV
Ga0214917_100429517	F015080	N/A	MFDLLNFQPHGIPNAIQATHKFENDWKISVVAGPPGCGLYGNINENTYEVGIFRPNGNLTEDVSGWNTKEEVSAMMWVLSQL
Ga0214917_100429518	F016800	AGGA	MLDAFTDYPIPSYGDIGGEKAPIRKATILTYDRNKYCDVLVYQVDEDGDLRGTVVNFKQFYLYKNEASYDDGIQFTDEELKTLPWTEVSYPHSI